Protein–RNA interactions for Protein: Q99LF4

Rtcb, tRNA-splicing ligase RtcB homolog, mousemouse

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RtcbQ99LF4 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC20.34■□□□□ 0.85
RtcbQ99LF4 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RtcbQ99LF4 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RtcbQ99LF4 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RtcbQ99LF4 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC20.33■□□□□ 0.85
RtcbQ99LF4 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC20.33■□□□□ 0.85
RtcbQ99LF4 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RtcbQ99LF4 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
RtcbQ99LF4 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RtcbQ99LF4 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
RtcbQ99LF4 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.32■□□□□ 0.84
RtcbQ99LF4 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RtcbQ99LF4 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
RtcbQ99LF4 Gm25406-201ENSMUST00000157599 105 ntBASIC20.31■□□□□ 0.84
RtcbQ99LF4 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RtcbQ99LF4 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RtcbQ99LF4 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
RtcbQ99LF4 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
RtcbQ99LF4 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
RtcbQ99LF4 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
RtcbQ99LF4 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RtcbQ99LF4 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
RtcbQ99LF4 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
RtcbQ99LF4 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RtcbQ99LF4 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Gm5648-201ENSMUST00000122244 1587 ntBASIC20.3■□□□□ 0.84
RtcbQ99LF4 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Mir3113-201ENSMUST00000175478 76 ntBASIC20.3■□□□□ 0.84
RtcbQ99LF4 Auts2-212ENSMUST00000178555 309 ntBASIC20.3■□□□□ 0.84
RtcbQ99LF4 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RtcbQ99LF4 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RtcbQ99LF4 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC20.29■□□□□ 0.84
RtcbQ99LF4 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RtcbQ99LF4 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RtcbQ99LF4 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC20.29■□□□□ 0.84
RtcbQ99LF4 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RtcbQ99LF4 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
RtcbQ99LF4 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC20.28■□□□□ 0.84
RtcbQ99LF4 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC20.28■□□□□ 0.84
RtcbQ99LF4 Mir8117-201ENSMUST00000184773 107 ntBASIC20.28■□□□□ 0.84
RtcbQ99LF4 Gm8969-201ENSMUST00000199694 526 ntBASIC20.28■□□□□ 0.84
RtcbQ99LF4 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC20.28■□□□□ 0.84
RtcbQ99LF4 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RtcbQ99LF4 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC20.28■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms