Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Gm7213-201ENSMUST00000215977 950 ntBASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.47■□□□□ 0.55
Ushbp1Q8R370 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Gm7153-201ENSMUST00000117092 455 ntBASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Gm18669-201ENSMUST00000216049 778 ntBASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ushbp1Q8R370 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Gm13186-201ENSMUST00000118031 316 ntBASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Umpk-ps-201ENSMUST00000211897 827 ntBASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ushbp1Q8R370 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
Ushbp1Q8R370 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ushbp1Q8R370 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ushbp1Q8R370 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms