Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ccdc28bQ8CEG5 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
Ccdc28bQ8CEG5 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ccdc28bQ8CEG5 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ccdc28bQ8CEG5 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ccdc28bQ8CEG5 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Gm21596-201ENSMUST00000178049 1316 ntBASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 CT010444.2-201ENSMUST00000217877 1629 ntBASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ccdc28bQ8CEG5 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ccdc28bQ8CEG5 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ccdc28bQ8CEG5 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ccdc28bQ8CEG5 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ccdc28bQ8CEG5 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ccdc28bQ8CEG5 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ccdc28bQ8CEG5 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ccdc28bQ8CEG5 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ccdc28bQ8CEG5 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ccdc28bQ8CEG5 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Gm24841-201ENSMUST00000158676 357 ntBASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Gm18284-201ENSMUST00000172604 624 ntBASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Gm18025-201ENSMUST00000221733 862 ntBASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ccdc28bQ8CEG5 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Gm11249-201ENSMUST00000117071 859 ntBASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc28bQ8CEG5 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Gm17661-201ENSMUST00000170317 270 ntBASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Ccdc28bQ8CEG5 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms