Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nup88Q8CEC0 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Gm8258-201ENSMUST00000055593 1449 ntBASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC19.45■□□□□ 0.7
Nup88Q8CEC0 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Gm21559-201ENSMUST00000220638 855 ntBASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 AC154471.1-201ENSMUST00000224418 436 ntBASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Gm8587-201ENSMUST00000076538 843 ntBASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Spsb2-203ENSMUST00000112473 1322 ntBASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Nup88Q8CEC0 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Nup88Q8CEC0 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Gm17661-201ENSMUST00000170317 270 ntBASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Ank2-226ENSMUST00000189368 339 ntBASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Nup88Q8CEC0 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Gm27389-201ENSMUST00000183622 195 ntBASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Gm5587-201ENSMUST00000206270 674 ntBASIC19.42■□□□□ 0.7
Nup88Q8CEC0 AC120002.2-201ENSMUST00000220205 773 ntBASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 83.1 ms