Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Usp40Q8BWR4 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Mir5131-201ENSMUST00000175426 93 ntBASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Usp40Q8BWR4 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Gm27525-201ENSMUST00000184465 107 ntBASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Usp40Q8BWR4 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Usp40Q8BWR4 Gm16401-202ENSMUST00000197463 2074 ntBASIC22.54■■□□□ 1.2
Usp40Q8BWR4 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
Usp40Q8BWR4 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Usp40Q8BWR4 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Usp40Q8BWR4 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC22.54■■□□□ 1.2
Usp40Q8BWR4 Gm10060-201ENSMUST00000212002 111 ntBASIC22.54■■□□□ 1.2
Usp40Q8BWR4 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
Usp40Q8BWR4 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Usp40Q8BWR4 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
Usp40Q8BWR4 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Usp40Q8BWR4 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Usp40Q8BWR4 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 AC138767.1-201ENSMUST00000222661 415 ntBASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Vti1a-206ENSMUST00000225529 1244 ntBASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Usp40Q8BWR4 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Usp40Q8BWR4 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
Usp40Q8BWR4 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms