Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Gm20628-201ENSMUST00000177363 3215 ntBASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Gm45058-201ENSMUST00000205810 766 ntBASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Gm7370-201ENSMUST00000219471 767 ntBASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 AC120002.2-201ENSMUST00000220205 773 ntBASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Cpsf4Q8BQZ5 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cpsf4Q8BQZ5 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Mir5130-201ENSMUST00000175160 84 ntBASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cpsf4Q8BQZ5 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC16■□□□□ 0.15
Cpsf4Q8BQZ5 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Cpsf4Q8BQZ5 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cpsf4Q8BQZ5 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cpsf4Q8BQZ5 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cpsf4Q8BQZ5 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
Cpsf4Q8BQZ5 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cpsf4Q8BQZ5 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cpsf4Q8BQZ5 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Cpsf4Q8BQZ5 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Cpsf4Q8BQZ5 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Cpsf4Q8BQZ5 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cpsf4Q8BQZ5 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms