Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Ccdc40Q8BI79 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Ccdc40Q8BI79 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Gm5417-201ENSMUST00000079706 384 ntBASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Ccdc40Q8BI79 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Ccdc40Q8BI79 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Gm37055-201ENSMUST00000191866 133 ntBASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Ccdc40Q8BI79 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.17■□□□□ 0.34
Ccdc40Q8BI79 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Ccdc40Q8BI79 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC17.17■□□□□ 0.34
Ccdc40Q8BI79 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ccdc40Q8BI79 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ccdc40Q8BI79 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ccdc40Q8BI79 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ccdc40Q8BI79 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ccdc40Q8BI79 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ccdc40Q8BI79 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ccdc40Q8BI79 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ccdc40Q8BI79 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms