Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC16.27■□□□□ 0.2
Ubp1Q811S7 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ubp1Q811S7 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ubp1Q811S7 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ubp1Q811S7 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ubp1Q811S7 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ubp1Q811S7 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.19
Ubp1Q811S7 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ubp1Q811S7 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Ubp1Q811S7 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ubp1Q811S7 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ubp1Q811S7 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ubp1Q811S7 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ubp1Q811S7 Gm26917-202ENSMUST00000192833 3329 ntBASIC16.25■□□□□ 0.19
Ubp1Q811S7 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 AC122351.1-201ENSMUST00000220467 126 ntBASIC16.25■□□□□ 0.19
Ubp1Q811S7 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ubp1Q811S7 Gm43548-201ENSMUST00000197139 2353 ntBASIC16.24■□□□□ 0.19
Ubp1Q811S7 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.24■□□□□ 0.19
Ubp1Q811S7 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Ubp1Q811S7 AA414768-201ENSMUST00000121924 1257 ntBASIC16.24■□□□□ 0.19
Ubp1Q811S7 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Gm44450-201ENSMUST00000199528 114 ntBASIC16.24■□□□□ 0.19
Ubp1Q811S7 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC16.24■□□□□ 0.19
Ubp1Q811S7 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ubp1Q811S7 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ubp1Q811S7 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ubp1Q811S7 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ubp1Q811S7 Gm8258-201ENSMUST00000055593 1449 ntBASIC16.23■□□□□ 0.19
Ubp1Q811S7 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ubp1Q811S7 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ubp1Q811S7 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ubp1Q811S7 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ubp1Q811S7 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ubp1Q811S7 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ubp1Q811S7 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ubp1Q811S7 Gm26596-201ENSMUST00000180464 2655 ntBASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms