Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ddx58Q6Q899 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ddx58Q6Q899 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ddx58Q6Q899 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ddx58Q6Q899 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Ddx58Q6Q899 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ddx58Q6Q899 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Ddx58Q6Q899 Gm6598-201ENSMUST00000202719 2615 ntBASIC20.38■□□□□ 0.85
Ddx58Q6Q899 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC20.38■□□□□ 0.85
Ddx58Q6Q899 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Mir8098-201ENSMUST00000184011 137 ntBASIC20.37■□□□□ 0.85
Ddx58Q6Q899 AC159301.1-201ENSMUST00000225130 1182 ntBASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx58Q6Q899 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx58Q6Q899 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx58Q6Q899 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx58Q6Q899 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
Ddx58Q6Q899 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx58Q6Q899 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx58Q6Q899 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Ddx58Q6Q899 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx58Q6Q899 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Gm5864-201ENSMUST00000202263 970 ntBASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Cmtm5-203ENSMUST00000227441 610 ntBASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ddx58Q6Q899 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Gm13884-201ENSMUST00000118103 829 ntBASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Mzt1-203ENSMUST00000227948 952 ntBASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Ddx58Q6Q899 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
Ddx58Q6Q899 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ddx58Q6Q899 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ddx58Q6Q899 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC20.33■□□□□ 0.84
Ddx58Q6Q899 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Ddx58Q6Q899 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Ddx58Q6Q899 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Ddx58Q6Q899 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddx58Q6Q899 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Ddx58Q6Q899 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Ddx58Q6Q899 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Ddx58Q6Q899 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddx58Q6Q899 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms