Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb4Q6P8W9 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC17.27■□□□□ 0.36
Hmgb4Q6P8W9 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Hmgb4Q6P8W9 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb4Q6P8W9 Spr-ps1-201ENSMUST00000089584 605 ntBASIC17.27■□□□□ 0.36
Hmgb4Q6P8W9 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hmgb4Q6P8W9 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb4Q6P8W9 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb4Q6P8W9 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb4Q6P8W9 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Hmgb4Q6P8W9 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
Hmgb4Q6P8W9 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Hmgb4Q6P8W9 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hmgb4Q6P8W9 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Phf7-203ENSMUST00000226565 1971 ntBASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hmgb4Q6P8W9 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Ighv6-1-201ENSMUST00000193612 343 ntBASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.24■□□□□ 0.35
Hmgb4Q6P8W9 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hmgb4Q6P8W9 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms