Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC16.14■□□□□ 0.17
Six3Q62233 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Six3Q62233 Gm6190-201ENSMUST00000220683 1374 ntBASIC16.13■□□□□ 0.17
Six3Q62233 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Phf7-203ENSMUST00000226565 1971 ntBASIC16.13■□□□□ 0.17
Six3Q62233 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Six3Q62233 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC16.13■□□□□ 0.17
Six3Q62233 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC16.13■□□□□ 0.17
Six3Q62233 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC16.13■□□□□ 0.17
Six3Q62233 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
Six3Q62233 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Six3Q62233 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.13■□□□□ 0.17
Six3Q62233 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Six3Q62233 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Six3Q62233 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Six3Q62233 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Six3Q62233 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC16.13■□□□□ 0.17
Six3Q62233 Gm42918-201ENSMUST00000199249 1580 ntBASIC16.13■□□□□ 0.17
Six3Q62233 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Six3Q62233 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.12■□□□□ 0.17
Six3Q62233 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC16.12■□□□□ 0.17
Six3Q62233 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC16.12■□□□□ 0.17
Six3Q62233 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC16.12■□□□□ 0.17
Six3Q62233 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Gm7370-201ENSMUST00000219471 767 ntBASIC16.12■□□□□ 0.17
Six3Q62233 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Six3Q62233 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Six3Q62233 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Six3Q62233 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.11■□□□□ 0.17
Six3Q62233 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Six3Q62233 Gm13186-201ENSMUST00000118031 316 ntBASIC16.11■□□□□ 0.17
Six3Q62233 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
Six3Q62233 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Gm9484-201ENSMUST00000195892 1159 ntBASIC16.11■□□□□ 0.17
Six3Q62233 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.11■□□□□ 0.17
Six3Q62233 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Six3Q62233 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC16.11■□□□□ 0.17
Six3Q62233 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Six3Q62233 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Six3Q62233 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Six3Q62233 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Six3Q62233 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Six3Q62233 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms