Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Upf3aQ3ULJ3 Zcchc6-207ENSMUST00000225576 2499 ntBASIC17.33■□□□□ 0.37
Upf3aQ3ULJ3 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Upf3aQ3ULJ3 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Upf3aQ3ULJ3 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Upf3aQ3ULJ3 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Upf3aQ3ULJ3 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Upf3aQ3ULJ3 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Upf3aQ3ULJ3 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Gm43073-201ENSMUST00000198200 1189 ntBASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.33■□□□□ 0.36
Upf3aQ3ULJ3 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Gm25990-201ENSMUST00000102440 86 ntBASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Gm4535-201ENSMUST00000182274 558 ntBASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Gm10355-201ENSMUST00000097146 517 ntBASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Upf3aQ3ULJ3 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Gm13418-201ENSMUST00000119097 944 ntBASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Upf3aQ3ULJ3 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Gm7230-201ENSMUST00000173026 815 ntBASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Gm5364-201ENSMUST00000216789 889 ntBASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms