Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CiitaP79621 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
CiitaP79621 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
CiitaP79621 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
CiitaP79621 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC17.86■□□□□ 0.45
CiitaP79621 Gm36967-201ENSMUST00000193814 266 ntBASIC17.86■□□□□ 0.45
CiitaP79621 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CiitaP79621 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CiitaP79621 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CiitaP79621 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CiitaP79621 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CiitaP79621 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CiitaP79621 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.85■□□□□ 0.45
CiitaP79621 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
CiitaP79621 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC17.85■□□□□ 0.45
CiitaP79621 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CiitaP79621 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CiitaP79621 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.84■□□□□ 0.45
CiitaP79621 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC17.84■□□□□ 0.45
CiitaP79621 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CiitaP79621 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CiitaP79621 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Rprl3-201ENSMUST00000157400 290 ntBASIC17.84■□□□□ 0.45
CiitaP79621 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC17.84■□□□□ 0.45
CiitaP79621 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.84■□□□□ 0.45
CiitaP79621 CT009713.7-201ENSMUST00000224689 571 ntBASIC17.84■□□□□ 0.45
CiitaP79621 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CiitaP79621 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
CiitaP79621 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CiitaP79621 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.83■□□□□ 0.45
CiitaP79621 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CiitaP79621 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CiitaP79621 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CiitaP79621 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CiitaP79621 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CiitaP79621 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.83■□□□□ 0.44
CiitaP79621 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.83■□□□□ 0.44
CiitaP79621 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Gm36858-201ENSMUST00000194501 2391 ntBASIC17.83■□□□□ 0.44
CiitaP79621 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.44
CiitaP79621 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CiitaP79621 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.82■□□□□ 0.44
CiitaP79621 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CiitaP79621 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Gm24589-201ENSMUST00000116692 94 ntBASIC17.82■□□□□ 0.44
CiitaP79621 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC17.82■□□□□ 0.44
CiitaP79621 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CiitaP79621 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.82■□□□□ 0.44
CiitaP79621 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.82■□□□□ 0.44
CiitaP79621 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.82■□□□□ 0.44
CiitaP79621 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CiitaP79621 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CiitaP79621 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms