Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC17.43■□□□□ 0.38
Shmt1P50431 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Shmt1P50431 Gm17971-201ENSMUST00000190239 806 ntBASIC17.43■□□□□ 0.38
Shmt1P50431 Ighv6-1-201ENSMUST00000193612 343 ntBASIC17.43■□□□□ 0.38
Shmt1P50431 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Shmt1P50431 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Shmt1P50431 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Shmt1P50431 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
Shmt1P50431 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Shmt1P50431 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.42■□□□□ 0.38
Shmt1P50431 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
Shmt1P50431 Gm27357-201ENSMUST00000183754 135 ntBASIC17.41■□□□□ 0.38
Shmt1P50431 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Shmt1P50431 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.41■□□□□ 0.38
Shmt1P50431 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Shmt1P50431 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.41■□□□□ 0.38
Shmt1P50431 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
Shmt1P50431 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Shmt1P50431 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Shmt1P50431 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.4■□□□□ 0.38
Shmt1P50431 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.4■□□□□ 0.38
Shmt1P50431 Mir3081-201ENSMUST00000175305 84 ntBASIC17.4■□□□□ 0.38
Shmt1P50431 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.4■□□□□ 0.38
Shmt1P50431 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Shmt1P50431 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Shmt1P50431 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Shmt1P50431 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Shmt1P50431 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Shmt1P50431 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Shmt1P50431 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Shmt1P50431 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Shmt1P50431 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Shmt1P50431 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.39■□□□□ 0.37
Shmt1P50431 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Shmt1P50431 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Shmt1P50431 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Shmt1P50431 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Shmt1P50431 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Shmt1P50431 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Shmt1P50431 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Shmt1P50431 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Shmt1P50431 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms