Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Rfx1P48377 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Rfx1P48377 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rfx1P48377 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rfx1P48377 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC19.77■□□□□ 0.76
Rfx1P48377 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rfx1P48377 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.77■□□□□ 0.76
Rfx1P48377 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.77■□□□□ 0.76
Rfx1P48377 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rfx1P48377 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC19.77■□□□□ 0.75
Rfx1P48377 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Rfx1P48377 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Rfx1P48377 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC19.76■□□□□ 0.75
Rfx1P48377 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC19.76■□□□□ 0.75
Rfx1P48377 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
Rfx1P48377 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
Rfx1P48377 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rfx1P48377 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
Rfx1P48377 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Wnt10b-204ENSMUST00000226655 1807 ntBASIC19.75■□□□□ 0.75
Rfx1P48377 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.75■□□□□ 0.75
Rfx1P48377 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.75■□□□□ 0.75
Rfx1P48377 Gm37025-201ENSMUST00000195159 829 ntBASIC19.75■□□□□ 0.75
Rfx1P48377 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
Rfx1P48377 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC19.75■□□□□ 0.75
Rfx1P48377 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rfx1P48377 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Rfx1P48377 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
Rfx1P48377 Gm19430-201ENSMUST00000193847 2137 ntBASIC19.74■□□□□ 0.75
Rfx1P48377 Gm20049-201ENSMUST00000219950 730 ntBASIC19.74■□□□□ 0.75
Rfx1P48377 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Rfx1P48377 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Rfx1P48377 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Rfx1P48377 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC19.73■□□□□ 0.75
Rfx1P48377 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.73■□□□□ 0.75
Rfx1P48377 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.73■□□□□ 0.75
Rfx1P48377 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.73■□□□□ 0.75
Rfx1P48377 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Rfx1P48377 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rfx1P48377 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms