Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Msh3P13705 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Msh3P13705 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Msh3P13705 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC18.16■□□□□ 0.5
Msh3P13705 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Msh3P13705 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC18.16■□□□□ 0.5
Msh3P13705 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Msh3P13705 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC18.16■□□□□ 0.5
Msh3P13705 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.16■□□□□ 0.5
Msh3P13705 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Msh3P13705 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Msh3P13705 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC18.15■□□□□ 0.5
Msh3P13705 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC18.15■□□□□ 0.5
Msh3P13705 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC18.15■□□□□ 0.5
Msh3P13705 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC18.15■□□□□ 0.5
Msh3P13705 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC18.15■□□□□ 0.5
Msh3P13705 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC18.15■□□□□ 0.5
Msh3P13705 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Msh3P13705 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Msh3P13705 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Msh3P13705 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Msh3P13705 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Msh3P13705 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Gm5587-201ENSMUST00000206270 674 ntBASIC18.14■□□□□ 0.49
Msh3P13705 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Msh3P13705 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
Msh3P13705 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Msh3P13705 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Gm43072-201ENSMUST00000200283 1671 ntBASIC18.14■□□□□ 0.49
Msh3P13705 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Msh3P13705 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh3P13705 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh3P13705 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Msh3P13705 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh3P13705 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC18.13■□□□□ 0.49
Msh3P13705 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.13■□□□□ 0.49
Msh3P13705 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Msh3P13705 Mir770-201ENSMUST00000103252 94 ntBASIC18.13■□□□□ 0.49
Msh3P13705 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh3P13705 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh3P13705 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC18.13■□□□□ 0.49
Msh3P13705 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC18.13■□□□□ 0.49
Msh3P13705 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Msh3P13705 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.13■□□□□ 0.49
Msh3P13705 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh3P13705 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms