Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
RaraP11416 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
RaraP11416 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
RaraP11416 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.83■□□□□ 0.45
RaraP11416 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
RaraP11416 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RaraP11416 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RaraP11416 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC17.83■□□□□ 0.45
RaraP11416 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.83■□□□□ 0.44
RaraP11416 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC17.83■□□□□ 0.44
RaraP11416 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.44
RaraP11416 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RaraP11416 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RaraP11416 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RaraP11416 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.83■□□□□ 0.44
RaraP11416 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC17.83■□□□□ 0.44
RaraP11416 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RaraP11416 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RaraP11416 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RaraP11416 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
RaraP11416 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RaraP11416 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RaraP11416 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RaraP11416 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.83■□□□□ 0.44
RaraP11416 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
RaraP11416 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
RaraP11416 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
RaraP11416 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
RaraP11416 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC17.82■□□□□ 0.44
RaraP11416 Gm22240-201ENSMUST00000175225 82 ntBASIC17.82■□□□□ 0.44
RaraP11416 Gm27463-201ENSMUST00000183569 57 ntBASIC17.82■□□□□ 0.44
RaraP11416 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.82■□□□□ 0.44
RaraP11416 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.82■□□□□ 0.44
RaraP11416 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
RaraP11416 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.82■□□□□ 0.44
RaraP11416 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC17.82■□□□□ 0.44
RaraP11416 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
RaraP11416 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RaraP11416 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RaraP11416 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RaraP11416 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
RaraP11416 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RaraP11416 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.81■□□□□ 0.44
RaraP11416 Gm7370-201ENSMUST00000219471 767 ntBASIC17.81■□□□□ 0.44
RaraP11416 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.81■□□□□ 0.44
RaraP11416 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC17.81■□□□□ 0.44
RaraP11416 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RaraP11416 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RaraP11416 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RaraP11416 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RaraP11416 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RaraP11416 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RaraP11416 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
RaraP11416 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RaraP11416 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
RaraP11416 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.8■□□□□ 0.44
RaraP11416 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
RaraP11416 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.8■□□□□ 0.44
RaraP11416 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
RaraP11416 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.8■□□□□ 0.44
RaraP11416 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
RaraP11416 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms