Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Hoxd3P09027 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC12.83□□□□□ -0.36
Hoxd3P09027 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC12.83□□□□□ -0.36
Hoxd3P09027 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Gm44450-201ENSMUST00000199528 114 ntBASIC12.83□□□□□ -0.36
Hoxd3P09027 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 AL590614.2-201ENSMUST00000225374 1937 ntBASIC12.83□□□□□ -0.36
Hoxd3P09027 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Hoxd3P09027 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Hoxd3P09027 Gm5049-201ENSMUST00000195878 1590 ntBASIC12.82□□□□□ -0.36
Hoxd3P09027 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
Hoxd3P09027 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Hoxd3P09027 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC12.82□□□□□ -0.36
Hoxd3P09027 Gm29707-201ENSMUST00000196325 491 ntBASIC12.82□□□□□ -0.36
Hoxd3P09027 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC12.82□□□□□ -0.36
Hoxd3P09027 Gm18421-201ENSMUST00000204122 625 ntBASIC12.82□□□□□ -0.36
Hoxd3P09027 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC12.82□□□□□ -0.36
Hoxd3P09027 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Hoxd3P09027 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Hoxd3P09027 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Hoxd3P09027 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC12.82□□□□□ -0.36
Hoxd3P09027 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Hoxd3P09027 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Hoxd3P09027 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Hoxd3P09027 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Hoxd3P09027 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC12.82□□□□□ -0.36
Hoxd3P09027 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Hoxd3P09027 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Hoxd3P09027 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Hoxd3P09027 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Gm6754-201ENSMUST00000117124 913 ntBASIC12.81□□□□□ -0.36
Hoxd3P09027 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC12.81□□□□□ -0.36
Hoxd3P09027 4931428L18Rik-202ENSMUST00000135245 889 ntAPPRIS P5 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Mir3081-201ENSMUST00000175305 84 ntBASIC12.81□□□□□ -0.36
Hoxd3P09027 Gm32390-201ENSMUST00000212713 1172 ntBASIC12.81□□□□□ -0.36
Hoxd3P09027 Otx2os1-206ENSMUST00000228153 787 ntBASIC12.81□□□□□ -0.36
Hoxd3P09027 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Hoxd3P09027 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Hoxd3P09027 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Hoxd3P09027 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Hoxd3P09027 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Hoxd3P09027 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC12.8□□□□□ -0.36
Hoxd3P09027 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Hoxd3P09027 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC12.8□□□□□ -0.36
Hoxd3P09027 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Hoxd3P09027 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC12.8□□□□□ -0.36
Hoxd3P09027 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC12.8□□□□□ -0.36
Hoxd3P09027 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms