Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 UBE2V2P3-201ENST00000433562 437 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 AC074367.1-201ENST00000438685 1125 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 CCRL1P1-201ENST00000449542 1053 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.71□□□□□ -1.82
COL4A4P53420 AC020893.1-201ENST00000502452 580 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.71□□□□□ -1.82
COL4A4P53420 AC118282.1-201ENST00000506408 765 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 AC138409.2-202ENST00000507274 458 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 MTCO3P42-201ENST00000509488 518 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 PCBP2P3-201ENST00000509726 843 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 AC023141.12-201ENST00000512399 199 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 AC118465.1-201ENST00000513820 1271 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 MTCO3P39-201ENST00000514812 518 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC3.71□□□□□ -1.82
COL4A4P53420 AC104763.2-201ENST00000604179 382 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC3.71□□□□□ -1.82
COL4A4P53420 Xist_exon4.1-201ENST00000615964 126 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 AC073592.7-201ENST00000623659 507 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC3.71□□□□□ -1.82
COL4A4P53420 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.71□□□□□ -1.82
COL4A4P53420 AC009950.2-201ENST00000636548 183 ntBASIC3.71□□□□□ -1.82
COL4A4P53420 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC3.71□□□□□ -1.82
COL4A4P53420 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A4P53420 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.7□□□□□ -1.82
COL4A4P53420 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A4P53420 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
COL4A4P53420 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A4P53420 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.7□□□□□ -1.82
COL4A4P53420 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A4P53420 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.7□□□□□ -1.82
COL4A4P53420 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A4P53420 LAP3P1-201ENST00000403648 294 ntBASIC3.7□□□□□ -1.82
COL4A4P53420 USP9YP19-201ENST00000412165 485 ntBASIC3.7□□□□□ -1.82
COL4A4P53420 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC3.7□□□□□ -1.82
COL4A4P53420 RPS15AP29-201ENST00000445539 400 ntBASIC3.7□□□□□ -1.82
COL4A4P53420 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC3.7□□□□□ -1.82
COL4A4P53420 AC005229.2-201ENST00000456995 399 ntBASIC3.7□□□□□ -1.82
COL4A4P53420 FCF1P8-201ENST00000510322 597 ntBASIC3.7□□□□□ -1.82
COL4A4P53420 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.7□□□□□ -1.82
COL4A4P53420 SNRPGP1-201ENST00000553864 222 ntBASIC3.7□□□□□ -1.82
COL4A4P53420 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC3.7□□□□□ -1.82
COL4A4P53420 AP003355.3-201ENST00000623465 114 ntBASIC3.7□□□□□ -1.82
COL4A4P53420 AL732372.2-225ENST00000642124 456 ntBASIC3.7□□□□□ -1.82
COL4A4P53420 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL4A4P53420 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
COL4A4P53420 AC007342.9-201ENST00000623877 1385 ntBASIC3.7□□□□□ -1.82
COL4A4P53420 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A4P53420 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.7□□□□□ -1.82
COL4A4P53420 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.7□□□□□ -1.82
COL4A4P53420 MTCO1P24-201ENST00000515438 1558 ntBASIC3.7□□□□□ -1.82
COL4A4P53420 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL4A4P53420 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
COL4A4P53420 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
COL4A4P53420 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A4P53420 AC007656.2-201ENST00000624902 4547 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
COL4A4P53420 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A4P53420 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 RNU6-729P-201ENST00000384399 107 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A4P53420 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A4P53420 BX842559.1-201ENST00000419615 532 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 COTL1P1-201ENST00000422309 375 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.69□□□□□ -1.82
COL4A4P53420 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A4P53420 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A4P53420 RPL27AP5-201ENST00000469428 449 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 RN7SL594P-201ENST00000470590 287 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 FCF1P3-201ENST00000496394 590 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.69□□□□□ -1.82
COL4A4P53420 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A4P53420 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A4P53420 LDHBP3-201ENST00000514909 822 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 AC018442.3-201ENST00000523025 183 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC3.69□□□□□ -1.82
COL4A4P53420 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.69□□□□□ -1.82
COL4A4P53420 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A4P53420 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.69□□□□□ -1.82
COL4A4P53420 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A4P53420 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.69□□□□□ -1.82
COL4A4P53420 CYP2C60P-201ENST00000566088 139 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 AC136601.2-201ENST00000604356 474 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.69□□□□□ -1.82
COL4A4P53420 MIR7851-201ENST00000610611 160 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.69□□□□□ -1.82
COL4A4P53420 BMS1P21-201ENST00000634565 365 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.69□□□□□ -1.82
COL4A4P53420 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A4P53420 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.69□□□□□ -1.82
COL4A4P53420 AL645937.1-201ENST00000641739 1652 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A4P53420 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.69□□□□□ -1.82
COL4A4P53420 ZNF826P-207ENST00000622273 1910 ntBASIC3.69□□□□□ -1.82
COL4A4P53420 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC3.69□□□□□ -1.82
COL4A4P53420 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A4P53420 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A4P53420 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL4A4P53420 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.68□□□□□ -1.82
COL4A4P53420 AL024507.1-201ENST00000412741 274 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms