Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXA3P55318 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA3P55318 AC091167.4-201ENST00000605079 184 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXA3P55318 AC145207.9-201ENST00000623802 325 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 CCT5-215ENST00000625723 135 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA3P55318 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXA3P55318 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA3P55318 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXA3P55318 AC005183.1-201ENST00000603687 1979 ntBASIC2.8□□□□□ -1.96
FOXA3P55318 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA3P55318 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA3P55318 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC2.79□□□□□ -1.96
FOXA3P55318 DCAF13P1-201ENST00000495256 1330 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA3P55318 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
FOXA3P55318 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
FOXA3P55318 RNU1-75P-201ENST00000347264 129 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA3P55318 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC2.79□□□□□ -1.96
FOXA3P55318 TPT1P2-201ENST00000413105 503 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 USP9YP9-201ENST00000429406 715 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 HSD52-202ENST00000436225 772 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA3P55318 SNORA71B-202ENST00000439232 272 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA3P55318 EIF2S2P2-201ENST00000447161 982 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA3P55318 CALM1P2-201ENST00000452941 448 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC2.79□□□□□ -1.96
FOXA3P55318 AC099563.1-201ENST00000456086 418 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 TSACC-207ENST00000470342 601 ntTSL 2 BASIC2.79□□□□□ -1.96
FOXA3P55318 RPS4XP22-201ENST00000480755 780 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 RPS3AP6-201ENST00000484430 795 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 RPS4XP14-201ENST00000493072 781 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 HMGB3P14-201ENST00000494195 599 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 RPL5P23-201ENST00000496040 868 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA3P55318 AC093720.1-201ENST00000505681 714 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA3P55318 AC111000.3-201ENST00000508057 576 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 IL7R-208ENST00000511982 612 ntTSL 2 BASIC2.79□□□□□ -1.96
FOXA3P55318 RNA5SP164-201ENST00000516533 110 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 RN7SKP92-201ENST00000517266 244 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 NPM1P52-201ENST00000518264 846 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC2.79□□□□□ -1.96
FOXA3P55318 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA3P55318 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA3P55318 AC011602.1-201ENST00000546484 331 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC2.79□□□□□ -1.96
FOXA3P55318 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC2.79□□□□□ -1.96
FOXA3P55318 AC006116.5-201ENST00000591936 559 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA3P55318 AL161616.1-201ENST00000611867 286 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 MIR7703-201ENST00000620784 77 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 AC079684.1-201ENST00000621405 437 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 ZNF826P-207ENST00000622273 1910 ntBASIC2.79□□□□□ -1.96
FOXA3P55318 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA3P55318 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA3P55318 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA3P55318 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA3P55318 AL356317.1-201ENST00000396110 1436 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA3P55318 OR4K17-201ENST00000315543 1032 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC079741.1-201ENST00000321498 212 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
FOXA3P55318 RNA5SP42-201ENST00000364278 115 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA3P55318 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA3P55318 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA3P55318 MIR105-2-201ENST00000385083 81 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 MT-TP-201ENST00000387461 68 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 SKINT1L-201ENST00000401057 817 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC011933.1-201ENST00000413334 321 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA3P55318 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA3P55318 RPL31P45-201ENST00000419532 356 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 RPL17P36-201ENST00000420302 549 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 TCEA1P2-201ENST00000420496 906 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA3P55318 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA3P55318 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC2.78□□□□□ -1.96
FOXA3P55318 NDUFB1P1-201ENST00000435191 180 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA3P55318 OR2AF1P-201ENST00000454899 889 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC116533.1-201ENST00000459748 321 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 RN7SL177P-201ENST00000476596 299 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AL132838.2-201ENST00000492041 314 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 FCF1P3-201ENST00000496394 590 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC023050.1-201ENST00000498198 304 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA3P55318 AK3P4-201ENST00000504283 583 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 RAC1P2-201ENST00000511164 579 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA3P55318 RNA5SP179-201ENST00000517284 121 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA3P55318 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA3P55318 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA3P55318 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC2.78□□□□□ -1.96
FOXA3P55318 AL121766.1-201ENST00000547436 487 ntBASIC2.78□□□□□ -1.96
FOXA3P55318 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms