Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA9P31269 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXA9P31269 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA9P31269 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA9P31269 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA9P31269 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXA9P31269 AC135001.1-201ENST00000544546 283 ntBASIC4.12□□□□□ -1.75
HOXA9P31269 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA9P31269 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
HOXA9P31269 AC079171.1-201ENST00000568788 914 ntBASIC4.12□□□□□ -1.75
HOXA9P31269 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXA9P31269 MIR4716-201ENST00000579628 84 ntBASIC4.12□□□□□ -1.75
HOXA9P31269 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXA9P31269 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA9P31269 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.12□□□□□ -1.75
HOXA9P31269 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXA9P31269 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.12□□□□□ -1.75
HOXA9P31269 AC104662.1-201ENST00000604448 511 ntBASIC4.12□□□□□ -1.75
HOXA9P31269 AC069200.1-201ENST00000609511 323 ntBASIC4.12□□□□□ -1.75
HOXA9P31269 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXA9P31269 AC107905.1-201ENST00000616204 426 ntBASIC4.12□□□□□ -1.75
HOXA9P31269 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXA9P31269 AC009093.8-201ENST00000641769 292 ntBASIC4.12□□□□□ -1.75
HOXA9P31269 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
HOXA9P31269 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXA9P31269 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA9P31269 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA9P31269 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXA9P31269 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
HOXA9P31269 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA9P31269 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA9P31269 RNU6-304P-201ENST00000364855 107 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA9P31269 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA9P31269 SNORA3C-201ENST00000408792 125 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.11□□□□□ -1.75
HOXA9P31269 RNA5SP104-201ENST00000410989 118 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 RPS3AP25-201ENST00000411660 793 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 RPL7AP73-201ENST00000413490 353 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA9P31269 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA9P31269 AC073464.3-201ENST00000422564 712 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA9P31269 UBE2V2P3-201ENST00000433562 437 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA9P31269 PRSS3P4-201ENST00000453323 162 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 SEPT7P6-201ENST00000469999 1143 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA9P31269 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA9P31269 AC025445.1-201ENST00000502728 300 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 AC147055.1-201ENST00000509261 750 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 RNU6-751P-201ENST00000516382 101 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 RNA5SP164-201ENST00000516533 110 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 DUXAP2-201ENST00000519198 589 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA9P31269 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA9P31269 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA9P31269 MTATP6P25-201ENST00000574491 261 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXA9P31269 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXA9P31269 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA9P31269 AC019176.2-201ENST00000611579 315 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 AL391261.4-201ENST00000616012 481 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 AC009318.3-201ENST00000616916 503 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 CFTRP2-201ENST00000634304 199 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 AC007529.1-201ENST00000418574 2178 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA9P31269 AC093311.1-201ENST00000506586 2021 ntBASIC4.11□□□□□ -1.75
HOXA9P31269 AC011266.1-201ENST00000624119 3569 ntBASIC4.1□□□□□ -1.75
HOXA9P31269 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
HOXA9P31269 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 MIR199A2-201ENST00000385289 110 ntBASIC4.1□□□□□ -1.75
HOXA9P31269 RNA5SP39-201ENST00000411245 120 ntBASIC4.1□□□□□ -1.75
HOXA9P31269 SYF2P2-201ENST00000417620 583 ntBASIC4.1□□□□□ -1.75
HOXA9P31269 OR6K4P-201ENST00000423179 955 ntBASIC4.1□□□□□ -1.75
HOXA9P31269 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA9P31269 AC091286.1-201ENST00000431233 461 ntBASIC4.1□□□□□ -1.75
HOXA9P31269 BX119904.1-201ENST00000432026 348 ntBASIC4.1□□□□□ -1.75
HOXA9P31269 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA9P31269 AL451050.1-201ENST00000450126 415 ntBASIC4.1□□□□□ -1.75
HOXA9P31269 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA9P31269 HMGB3P21-201ENST00000452483 547 ntBASIC4.1□□□□□ -1.75
HOXA9P31269 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXA9P31269 SCARNA14-201ENST00000516903 136 ntBASIC4.1□□□□□ -1.75
HOXA9P31269 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA9P31269 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA9P31269 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA9P31269 AP000619.3-201ENST00000535634 1127 ntBASIC4.1□□□□□ -1.75
HOXA9P31269 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA9P31269 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms