Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL6A3P12111 AC008837.1-201ENST00000511513 412 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.63□□□□□ -1.83
COL6A3P12111 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.63□□□□□ -1.83
COL6A3P12111 AC022968.1-201ENST00000567372 442 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.63□□□□□ -1.83
COL6A3P12111 AC069209.1-201ENST00000619282 651 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL6A3P12111 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.63□□□□□ -1.83
COL6A3P12111 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL6A3P12111 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL6A3P12111 AC004656.1-201ENST00000568479 4951 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.63□□□□□ -1.83
COL6A3P12111 RNA5SP187-201ENST00000384400 119 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 MIR7-2-201ENST00000384970 110 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 TOPORSLP1-201ENST00000467693 2102 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL6A3P12111 PSMA2P1-201ENST00000526365 646 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.63□□□□□ -1.83
COL6A3P12111 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.63□□□□□ -1.83
COL6A3P12111 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.63□□□□□ -1.83
COL6A3P12111 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
COL6A3P12111 DNM1P47-203ENST00000571780 12667 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC3.62□□□□□ -1.83
COL6A3P12111 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 MTCO1P8-201ENST00000416914 1523 ntBASIC3.62□□□□□ -1.83
COL6A3P12111 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC3.62□□□□□ -1.83
COL6A3P12111 AC090602.1-201ENST00000469695 252 ntBASIC3.62□□□□□ -1.83
COL6A3P12111 NDUFB9P3-201ENST00000521269 501 ntBASIC3.62□□□□□ -1.83
COL6A3P12111 AC006557.5-201ENST00000603126 811 ntBASIC3.62□□□□□ -1.83
COL6A3P12111 ATP1B3P1-201ENST00000605365 821 ntBASIC3.62□□□□□ -1.83
COL6A3P12111 AL732618.1-201ENST00000623251 301 ntBASIC3.62□□□□□ -1.83
COL6A3P12111 AC127502.3-201ENST00000636170 1206 ntBASIC3.62□□□□□ -1.83
COL6A3P12111 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.62□□□□□ -1.83
COL6A3P12111 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.62□□□□□ -1.83
COL6A3P12111 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 HSPA8P19-201ENST00000505359 1517 ntBASIC3.62□□□□□ -1.83
COL6A3P12111 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
COL6A3P12111 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.62□□□□□ -1.83
COL6A3P12111 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC3.62□□□□□ -1.83
COL6A3P12111 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.62□□□□□ -1.83
COL6A3P12111 AC008264.1-201ENST00000447612 367 ntBASIC3.62□□□□□ -1.83
COL6A3P12111 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 ANXA2P1-201ENST00000505539 926 ntBASIC3.62□□□□□ -1.83
COL6A3P12111 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.62□□□□□ -1.83
COL6A3P12111 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.62□□□□□ -1.83
COL6A3P12111 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL6A3P12111 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
COL6A3P12111 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.61□□□□□ -1.83
COL6A3P12111 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 AL139281.1-201ENST00000422120 335 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 AC008413.1-201ENST00000511864 177 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC3.61□□□□□ -1.83
COL6A3P12111 RNU4-29P-201ENST00000515943 174 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC3.61□□□□□ -1.83
COL6A3P12111 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL6A3P12111 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.61□□□□□ -1.83
COL6A3P12111 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC3.61□□□□□ -1.83
COL6A3P12111 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
COL6A3P12111 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL6A3P12111 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL6A3P12111 AL079305.1-201ENST00000623159 3008 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 HLFP1-201ENST00000402375 499 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 RPS29P26-201ENST00000477483 171 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.61□□□□□ -1.83
COL6A3P12111 DEFB109A-201ENST00000482450 265 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 AC105227.2-201ENST00000615075 605 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 AP003355.3-201ENST00000623465 114 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 AL645568.2-201ENST00000432815 1337 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL6A3P12111 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC3.61□□□□□ -1.83
COL6A3P12111 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.61□□□□□ -1.83
COL6A3P12111 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC3.61□□□□□ -1.83
COL6A3P12111 AL139132.1-201ENST00000431587 344 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.61□□□□□ -1.83
COL6A3P12111 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL6A3P12111 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL6A3P12111 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL6A3P12111 SMC4P1-201ENST00000414479 527 ntBASIC3.6□□□□□ -1.83
COL6A3P12111 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
COL6A3P12111 AC099563.1-201ENST00000456086 418 ntBASIC3.6□□□□□ -1.83
COL6A3P12111 RPL23AP65-201ENST00000475608 468 ntBASIC3.6□□□□□ -1.83
COL6A3P12111 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.6□□□□□ -1.83
COL6A3P12111 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC3.6□□□□□ -1.83
COL6A3P12111 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms