Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Gm29994-201ENSMUST00000195495 1193 ntBASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Prpf40aQ9R1C7 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Mir1668-201ENSMUST00000184114 107 ntBASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 AL590614.2-201ENSMUST00000225374 1937 ntBASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Gm20628-201ENSMUST00000177363 3215 ntBASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Prpf40aQ9R1C7 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Gm26917-202ENSMUST00000192833 3329 ntBASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Gm7213-201ENSMUST00000215977 950 ntBASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms