Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ube3bQ9ES34 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ube3bQ9ES34 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ube3bQ9ES34 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ube3bQ9ES34 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ube3bQ9ES34 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Spr-ps1-201ENSMUST00000089584 605 ntBASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ube3bQ9ES34 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Umpk-ps-201ENSMUST00000211897 827 ntBASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ube3bQ9ES34 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Gm34391-201ENSMUST00000203706 907 ntBASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ube3bQ9ES34 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ube3bQ9ES34 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Ube3bQ9ES34 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ube3bQ9ES34 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ube3bQ9ES34 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ube3bQ9ES34 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ube3bQ9ES34 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 AC114585.2-202ENSMUST00000228094 426 ntBASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Gm32996-201ENSMUST00000199828 1447 ntBASIC19.58■□□□□ 0.72
Ube3bQ9ES34 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ube3bQ9ES34 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ube3bQ9ES34 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms