Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ddx56Q9D0R4 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ddx56Q9D0R4 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Gm18421-201ENSMUST00000204122 625 ntBASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ddx56Q9D0R4 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Gm27389-201ENSMUST00000183622 195 ntBASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ddx56Q9D0R4 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Gm28265-201ENSMUST00000188201 2319 ntBASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Gm22697-201ENSMUST00000175194 63 ntBASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Gm9987-201ENSMUST00000069768 567 ntBASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms