Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Gm45412-201ENSMUST00000210217 2275 ntBASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trub1Q8C0D0 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 AC134329.2-201ENSMUST00000217897 428 ntBASIC17.07■□□□□ 0.32
Trub1Q8C0D0 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trub1Q8C0D0 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trub1Q8C0D0 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trub1Q8C0D0 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Gm29707-201ENSMUST00000196325 491 ntBASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trub1Q8C0D0 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trub1Q8C0D0 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms