Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.51■□□□□ 0.71
Trim56Q80VI1 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim56Q80VI1 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim56Q80VI1 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Trim56Q80VI1 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim56Q80VI1 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Trim56Q80VI1 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Trim56Q80VI1 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
Trim56Q80VI1 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim56Q80VI1 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
Trim56Q80VI1 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trim56Q80VI1 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Trim56Q80VI1 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trim56Q80VI1 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim56Q80VI1 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Ighv6-1-201ENSMUST00000193612 343 ntBASIC19.48■□□□□ 0.71
Trim56Q80VI1 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC19.48■□□□□ 0.71
Trim56Q80VI1 AC159205.3-201ENSMUST00000224614 874 ntBASIC19.48■□□□□ 0.71
Trim56Q80VI1 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim56Q80VI1 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim56Q80VI1 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC19.46■□□□□ 0.71
Trim56Q80VI1 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim56Q80VI1 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms