Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Six3Q62233 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Six3Q62233 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Six3Q62233 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Six3Q62233 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Six3Q62233 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Six3Q62233 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Gfra2-202ENSMUST00000227633 1480 ntBASIC16.17■□□□□ 0.18
Six3Q62233 Dancr-204ENSMUST00000132389 2347 ntBASIC16.17■□□□□ 0.18
Six3Q62233 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Six3Q62233 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC16.17■□□□□ 0.18
Six3Q62233 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC16.17■□□□□ 0.18
Six3Q62233 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC16.17■□□□□ 0.18
Six3Q62233 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC16.17■□□□□ 0.18
Six3Q62233 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Six3Q62233 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Six3Q62233 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Six3Q62233 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Six3Q62233 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Six3Q62233 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Gm27463-201ENSMUST00000183569 57 ntBASIC16.16■□□□□ 0.18
Six3Q62233 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC16.16■□□□□ 0.18
Six3Q62233 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
Six3Q62233 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC16.16■□□□□ 0.18
Six3Q62233 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Six3Q62233 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC16.16■□□□□ 0.18
Six3Q62233 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Six3Q62233 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Six3Q62233 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC16.15■□□□□ 0.18
Six3Q62233 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Six3Q62233 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Six3Q62233 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Six3Q62233 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC16.15■□□□□ 0.18
Six3Q62233 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Six3Q62233 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
Six3Q62233 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Gm5417-201ENSMUST00000079706 384 ntBASIC16.15■□□□□ 0.18
Six3Q62233 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC16.15■□□□□ 0.18
Six3Q62233 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Six3Q62233 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Six3Q62233 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.18
Six3Q62233 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.18
Six3Q62233 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.18
Six3Q62233 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Six3Q62233 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC16.14■□□□□ 0.17
Six3Q62233 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Six3Q62233 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Six3Q62233 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Six3Q62233 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms