Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim27Q62158 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Trim27Q62158 Gm26917-202ENSMUST00000192833 3329 ntBASIC20.35■□□□□ 0.85
Trim27Q62158 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim27Q62158 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC20.34■□□□□ 0.85
Trim27Q62158 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Trim27Q62158 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trim27Q62158 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim27Q62158 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim27Q62158 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
Trim27Q62158 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trim27Q62158 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC20.34■□□□□ 0.85
Trim27Q62158 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim27Q62158 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim27Q62158 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
Trim27Q62158 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC20.34■□□□□ 0.85
Trim27Q62158 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim27Q62158 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim27Q62158 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim27Q62158 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim27Q62158 Gm15442-201ENSMUST00000117905 1527 ntBASIC20.33■□□□□ 0.85
Trim27Q62158 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim27Q62158 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim27Q62158 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim27Q62158 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim27Q62158 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim27Q62158 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim27Q62158 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Trim27Q62158 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim27Q62158 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Trim27Q62158 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Trim27Q62158 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim27Q62158 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim27Q62158 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim27Q62158 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim27Q62158 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim27Q62158 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim27Q62158 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Trim27Q62158 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim27Q62158 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim27Q62158 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC20.32■□□□□ 0.84
Trim27Q62158 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC20.32■□□□□ 0.84
Trim27Q62158 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Trim27Q62158 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Trim27Q62158 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim27Q62158 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Trim27Q62158 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Trim27Q62158 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Trim27Q62158 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim27Q62158 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Gm11355-201ENSMUST00000121120 306 ntBASIC20.3■□□□□ 0.84
Trim27Q62158 Gm11860-201ENSMUST00000122346 1010 ntBASIC20.3■□□□□ 0.84
Trim27Q62158 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Trim27Q62158 AC122351.1-201ENSMUST00000220467 126 ntBASIC20.3■□□□□ 0.84
Trim27Q62158 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim27Q62158 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Trim27Q62158 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
Trim27Q62158 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Trim27Q62158 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms