Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Gm24755-201ENSMUST00000179691 110 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Gm26506-201ENSMUST00000179692 110 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Gm25086-201ENSMUST00000179931 110 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Gm23243-201ENSMUST00000180047 110 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Gm24659-201ENSMUST00000180212 110 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Gm24169-201ENSMUST00000180244 110 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Gm23689-201ENSMUST00000180354 110 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Gm27359-201ENSMUST00000184153 110 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Gm27785-201ENSMUST00000184268 110 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Gm27466-201ENSMUST00000184396 110 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Gm27703-201ENSMUST00000184836 110 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rnf180Q3U827 Gm9899-201ENSMUST00000065519 555 ntBASIC19.43■□□□□ 0.7
Rnf180Q3U827 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf180Q3U827 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Gm24158-201ENSMUST00000175263 71 ntBASIC19.42■□□□□ 0.7
Rnf180Q3U827 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC19.42■□□□□ 0.7
Rnf180Q3U827 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Rnf180Q3U827 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Gm12490-201ENSMUST00000120255 560 ntBASIC19.41■□□□□ 0.7
Rnf180Q3U827 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC19.41■□□□□ 0.7
Rnf180Q3U827 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf180Q3U827 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf180Q3U827 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf180Q3U827 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC19.4■□□□□ 0.7
Rnf180Q3U827 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf180Q3U827 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf180Q3U827 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC19.4■□□□□ 0.7
Rnf180Q3U827 AC093926.2-201ENSMUST00000214468 1228 ntBASIC19.4■□□□□ 0.7
Rnf180Q3U827 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf180Q3U827 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf180Q3U827 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf180Q3U827 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf180Q3U827 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Rnf180Q3U827 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
Rnf180Q3U827 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Rnf180Q3U827 Gm7488-201ENSMUST00000117148 684 ntBASIC19.39■□□□□ 0.69
Rnf180Q3U827 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC19.39■□□□□ 0.69
Rnf180Q3U827 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf180Q3U827 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf180Q3U827 Gm5177-201ENSMUST00000183092 997 ntBASIC19.39■□□□□ 0.69
Rnf180Q3U827 Gm27306-201ENSMUST00000183970 107 ntBASIC19.39■□□□□ 0.69
Rnf180Q3U827 Mir6420-201ENSMUST00000185032 102 ntBASIC19.39■□□□□ 0.69
Rnf180Q3U827 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf180Q3U827 AC135669.1-201ENSMUST00000213585 412 ntBASIC19.39■□□□□ 0.69
Rnf180Q3U827 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf180Q3U827 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf180Q3U827 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf180Q3U827 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf180Q3U827 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Gm27618-201ENSMUST00000183671 60 ntBASIC19.38■□□□□ 0.69
Rnf180Q3U827 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Gpr146-202ENSMUST00000053120 1040 ntBASIC19.38■□□□□ 0.69
Rnf180Q3U827 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Fcho2-208ENSMUST00000224992 2964 ntBASIC19.38■□□□□ 0.69
Rnf180Q3U827 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf180Q3U827 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf180Q3U827 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms