Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Msh3P13705 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Msh3P13705 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh3P13705 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Msh3P13705 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh3P13705 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh3P13705 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh3P13705 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh3P13705 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh3P13705 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Msh3P13705 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.21■□□□□ 0.51
Msh3P13705 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC18.21■□□□□ 0.51
Msh3P13705 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC18.21■□□□□ 0.51
Msh3P13705 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 Gm32996-201ENSMUST00000199828 1447 ntBASIC18.21■□□□□ 0.51
Msh3P13705 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Msh3P13705 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Msh3P13705 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Msh3P13705 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Msh3P13705 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh3P13705 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh3P13705 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh3P13705 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh3P13705 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh3P13705 Gm14464-201ENSMUST00000119658 1254 ntBASIC18.2■□□□□ 0.5
Msh3P13705 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh3P13705 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Msh3P13705 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC18.2■□□□□ 0.5
Msh3P13705 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
Msh3P13705 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh3P13705 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Msh3P13705 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Msh3P13705 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC18.2■□□□□ 0.5
Msh3P13705 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Msh3P13705 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Msh3P13705 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Msh3P13705 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Msh3P13705 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Msh3P13705 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Msh3P13705 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Msh3P13705 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC18.19■□□□□ 0.5
Msh3P13705 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.19■□□□□ 0.5
Msh3P13705 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 AC121577.1-201ENSMUST00000227302 707 ntBASIC18.19■□□□□ 0.5
Msh3P13705 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Msh3P13705 Zkscan4-202ENSMUST00000225845 1506 ntBASIC18.18■□□□□ 0.5
Msh3P13705 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh3P13705 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Msh3P13705 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Msh3P13705 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.18■□□□□ 0.5
Msh3P13705 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh3P13705 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh3P13705 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.18■□□□□ 0.5
Msh3P13705 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Msh3P13705 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC18.18■□□□□ 0.5
Msh3P13705 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.18■□□□□ 0.5
Msh3P13705 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh3P13705 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh3P13705 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Msh3P13705 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh3P13705 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Msh3P13705 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Msh3P13705 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC18.18■□□□□ 0.5
Msh3P13705 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Msh3P13705 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.17■□□□□ 0.5
Msh3P13705 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.17■□□□□ 0.5
Msh3P13705 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Msh3P13705 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.17■□□□□ 0.5
Msh3P13705 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Gm9013-201ENSMUST00000132939 882 ntBASIC18.17■□□□□ 0.5
Msh3P13705 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Msh3P13705 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC18.17■□□□□ 0.5
Msh3P13705 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms