Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
Msx1P13297 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Msx1P13297 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC15.66■□□□□ 0.1
Msx1P13297 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Msx1P13297 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC15.66■□□□□ 0.1
Msx1P13297 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Msx1P13297 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC15.66■□□□□ 0.1
Msx1P13297 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC15.66■□□□□ 0.1
Msx1P13297 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Msx1P13297 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx1P13297 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Msx1P13297 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Msx1P13297 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx1P13297 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx1P13297 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx1P13297 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Msx1P13297 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx1P13297 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
Msx1P13297 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Msx1P13297 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Msx1P13297 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC15.65■□□□□ 0.1
Msx1P13297 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx1P13297 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx1P13297 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Msx1P13297 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Msx1P13297 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx1P13297 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC15.65■□□□□ 0.1
Msx1P13297 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Msx1P13297 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Msx1P13297 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC15.64■□□□□ 0.09
Msx1P13297 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
Msx1P13297 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC15.64■□□□□ 0.09
Msx1P13297 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC15.64■□□□□ 0.09
Msx1P13297 Ighv6-1-201ENSMUST00000193612 343 ntBASIC15.64■□□□□ 0.09
Msx1P13297 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC15.64■□□□□ 0.09
Msx1P13297 Birc2-201ENSMUST00000054878 378 ntBASIC15.64■□□□□ 0.09
Msx1P13297 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Msx1P13297 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Msx1P13297 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Msx1P13297 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Msx1P13297 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Msx1P13297 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.63■□□□□ 0.09
Msx1P13297 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC15.63■□□□□ 0.09
Msx1P13297 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC15.63■□□□□ 0.09
Msx1P13297 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Gm11841-201ENSMUST00000117060 1963 ntBASIC15.63■□□□□ 0.09
Msx1P13297 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Msx1P13297 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
Msx1P13297 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Msx1P13297 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Msx1P13297 Actl10-202ENSMUST00000226583 1501 ntBASIC15.63■□□□□ 0.09
Msx1P13297 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Msx1P13297 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Msx1P13297 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Msx1P13297 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms