Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.46
RaraP11416 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
RaraP11416 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
RaraP11416 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 AC115863.1-201ENSMUST00000214815 1813 ntBASIC17.89■□□□□ 0.45
RaraP11416 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
RaraP11416 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.89■□□□□ 0.45
RaraP11416 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
RaraP11416 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RaraP11416 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
RaraP11416 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RaraP11416 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17.88■□□□□ 0.45
RaraP11416 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC17.88■□□□□ 0.45
RaraP11416 Mir5122-201ENSMUST00000175004 89 ntBASIC17.88■□□□□ 0.45
RaraP11416 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 Phf7-203ENSMUST00000226565 1971 ntBASIC17.88■□□□□ 0.45
RaraP11416 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
RaraP11416 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RaraP11416 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RaraP11416 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RaraP11416 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RaraP11416 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
RaraP11416 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
RaraP11416 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RaraP11416 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RaraP11416 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RaraP11416 Gm13186-201ENSMUST00000118031 316 ntBASIC17.87■□□□□ 0.45
RaraP11416 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RaraP11416 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.87■□□□□ 0.45
RaraP11416 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC17.87■□□□□ 0.45
RaraP11416 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC17.87■□□□□ 0.45
RaraP11416 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
RaraP11416 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
RaraP11416 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.87■□□□□ 0.45
RaraP11416 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RaraP11416 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RaraP11416 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
RaraP11416 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RaraP11416 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC17.87■□□□□ 0.45
RaraP11416 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RaraP11416 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
RaraP11416 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
RaraP11416 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC17.86■□□□□ 0.45
RaraP11416 Gm27011-201ENSMUST00000182352 972 ntBASIC17.86■□□□□ 0.45
RaraP11416 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RaraP11416 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
RaraP11416 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RaraP11416 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
RaraP11416 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RaraP11416 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC17.85■□□□□ 0.45
RaraP11416 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RaraP11416 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RaraP11416 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RaraP11416 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RaraP11416 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
RaraP11416 Actl10-202ENSMUST00000226583 1501 ntBASIC17.85■□□□□ 0.45
RaraP11416 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RaraP11416 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RaraP11416 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RaraP11416 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.85■□□□□ 0.45
RaraP11416 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
RaraP11416 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RaraP11416 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RaraP11416 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms