Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp6P0C0A3 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp6P0C0A3 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.02■□□□□ 0.48
Chmp6P0C0A3 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Chmp6P0C0A3 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Chmp6P0C0A3 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Chmp6P0C0A3 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Chmp6P0C0A3 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Chmp6P0C0A3 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Chmp6P0C0A3 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
Chmp6P0C0A3 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Chmp6P0C0A3 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Chmp6P0C0A3 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC18■□□□□ 0.47
Chmp6P0C0A3 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
Chmp6P0C0A3 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18■□□□□ 0.47
Chmp6P0C0A3 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18■□□□□ 0.47
Chmp6P0C0A3 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
Chmp6P0C0A3 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Gm10013-201ENSMUST00000106074 672 ntBASIC17.99■□□□□ 0.47
Chmp6P0C0A3 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Gm27389-201ENSMUST00000183622 195 ntBASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Chmp6P0C0A3 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Gm3272-201ENSMUST00000181181 1229 ntBASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Gm18032-201ENSMUST00000222541 538 ntBASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Gm10566-201ENSMUST00000086739 996 ntBASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Chmp6P0C0A3 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chmp6P0C0A3 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Chmp6P0C0A3 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chmp6P0C0A3 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chmp6P0C0A3 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC17.97■□□□□ 0.47
Chmp6P0C0A3 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chmp6P0C0A3 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chmp6P0C0A3 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chmp6P0C0A3 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Chmp6P0C0A3 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Chmp6P0C0A3 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Chmp6P0C0A3 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms