Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hoxd3P09027 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC12.87□□□□□ -0.35
Hoxd3P09027 Gm16499-203ENSMUST00000204633 2177 ntBASIC12.87□□□□□ -0.35
Hoxd3P09027 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hoxd3P09027 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC12.87□□□□□ -0.35
Hoxd3P09027 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Hoxd3P09027 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Hoxd3P09027 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hoxd3P09027 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC12.86□□□□□ -0.35
Hoxd3P09027 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Hoxd3P09027 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Hoxd3P09027 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC12.86□□□□□ -0.35
Hoxd3P09027 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Hoxd3P09027 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Hoxd3P09027 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Hoxd3P09027 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC12.86□□□□□ -0.35
Hoxd3P09027 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Hoxd3P09027 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC12.85□□□□□ -0.35
Hoxd3P09027 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
Hoxd3P09027 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Gm17807-201ENSMUST00000186869 298 ntBASIC12.85□□□□□ -0.35
Hoxd3P09027 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Gpr146-202ENSMUST00000053120 1040 ntBASIC12.85□□□□□ -0.35
Hoxd3P09027 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Ddx41-204ENSMUST00000224765 2199 ntBASIC12.85□□□□□ -0.35
Hoxd3P09027 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Hoxd3P09027 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hoxd3P09027 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Hoxd3P09027 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Hoxd3P09027 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Hoxd3P09027 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC12.84□□□□□ -0.35
Hoxd3P09027 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC12.84□□□□□ -0.35
Hoxd3P09027 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Gm27742-201ENSMUST00000184667 60 ntBASIC12.84□□□□□ -0.35
Hoxd3P09027 Ighv6-1-201ENSMUST00000193612 343 ntBASIC12.84□□□□□ -0.35
Hoxd3P09027 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC12.84□□□□□ -0.35
Hoxd3P09027 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC12.84□□□□□ -0.35
Hoxd3P09027 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Gm43294-201ENSMUST00000202850 2490 ntBASIC12.84□□□□□ -0.35
Hoxd3P09027 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC12.84□□□□□ -0.35
Hoxd3P09027 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC12.84□□□□□ -0.35
Hoxd3P09027 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hoxd3P09027 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Hoxd3P09027 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Hoxd3P09027 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Hoxd3P09027 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Hoxd3P09027 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms