Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Col3a1P08121 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC19.68■□□□□ 0.74
Col3a1P08121 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 Gm4535-201ENSMUST00000182274 558 ntBASIC19.68■□□□□ 0.74
Col3a1P08121 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC19.68■□□□□ 0.74
Col3a1P08121 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC19.68■□□□□ 0.74
Col3a1P08121 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 Gm10355-201ENSMUST00000097146 517 ntBASIC19.68■□□□□ 0.74
Col3a1P08121 Gm8839-201ENSMUST00000121279 1645 ntBASIC19.68■□□□□ 0.74
Col3a1P08121 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Col3a1P08121 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC19.68■□□□□ 0.74
Col3a1P08121 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col3a1P08121 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Col3a1P08121 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Col3a1P08121 Mir5126-201ENSMUST00000175513 77 ntBASIC19.67■□□□□ 0.74
Col3a1P08121 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC19.67■□□□□ 0.74
Col3a1P08121 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Col3a1P08121 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC19.67■□□□□ 0.74
Col3a1P08121 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC19.67■□□□□ 0.74
Col3a1P08121 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Col3a1P08121 Gm36858-201ENSMUST00000194501 2391 ntBASIC19.67■□□□□ 0.74
Col3a1P08121 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC19.67■□□□□ 0.74
Col3a1P08121 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col3a1P08121 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col3a1P08121 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col3a1P08121 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col3a1P08121 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col3a1P08121 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col3a1P08121 Gm4459-201ENSMUST00000118750 468 ntBASIC19.66■□□□□ 0.74
Col3a1P08121 Gm12350-201ENSMUST00000121208 462 ntBASIC19.66■□□□□ 0.74
Col3a1P08121 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col3a1P08121 Gm7230-201ENSMUST00000173026 815 ntBASIC19.66■□□□□ 0.74
Col3a1P08121 Mir5131-201ENSMUST00000175426 93 ntBASIC19.66■□□□□ 0.74
Col3a1P08121 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col3a1P08121 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC19.66■□□□□ 0.74
Col3a1P08121 Gm9172-201ENSMUST00000212092 954 ntBASIC19.66■□□□□ 0.74
Col3a1P08121 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC19.66■□□□□ 0.74
Col3a1P08121 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col3a1P08121 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col3a1P08121 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col3a1P08121 AC132265.1-201ENSMUST00000219233 1665 ntBASIC19.65■□□□□ 0.74
Col3a1P08121 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col3a1P08121 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC19.65■□□□□ 0.74
Col3a1P08121 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col3a1P08121 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC19.65■□□□□ 0.74
Col3a1P08121 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col3a1P08121 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col3a1P08121 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.65■□□□□ 0.74
Col3a1P08121 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col3a1P08121 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col3a1P08121 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col3a1P08121 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Col3a1P08121 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col3a1P08121 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Col3a1P08121 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col3a1P08121 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC19.64■□□□□ 0.73
Col3a1P08121 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC19.64■□□□□ 0.73
Col3a1P08121 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC19.64■□□□□ 0.73
Col3a1P08121 Gm37935-201ENSMUST00000192012 982 ntBASIC19.64■□□□□ 0.73
Col3a1P08121 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC19.64■□□□□ 0.73
Col3a1P08121 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col3a1P08121 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Col3a1P08121 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col3a1P08121 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC19.64■□□□□ 0.73
Col3a1P08121 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC19.64■□□□□ 0.73
Col3a1P08121 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col3a1P08121 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col3a1P08121 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col3a1P08121 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col3a1P08121 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC19.63■□□□□ 0.73
Col3a1P08121 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Col3a1P08121 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Col3a1P08121 Gm8097-201ENSMUST00000117903 829 ntBASIC19.63■□□□□ 0.73
Col3a1P08121 Gm13418-201ENSMUST00000119097 944 ntBASIC19.63■□□□□ 0.73
Col3a1P08121 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC19.63■□□□□ 0.73
Col3a1P08121 AC138767.1-201ENSMUST00000222661 415 ntBASIC19.63■□□□□ 0.73
Col3a1P08121 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col3a1P08121 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.63■□□□□ 0.73
Col3a1P08121 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col3a1P08121 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col3a1P08121 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC19.62■□□□□ 0.73
Col3a1P08121 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col3a1P08121 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms