Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.98□□□□□ -0.01
Lmx1bO88609 Gm14464-201ENSMUST00000119658 1254 ntBASIC14.98□□□□□ -0.01
Lmx1bO88609 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Gm17971-201ENSMUST00000190239 806 ntBASIC14.98□□□□□ -0.01
Lmx1bO88609 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lmx1bO88609 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lmx1bO88609 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lmx1bO88609 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lmx1bO88609 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lmx1bO88609 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lmx1bO88609 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.97□□□□□ -0.01
Lmx1bO88609 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lmx1bO88609 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lmx1bO88609 Gm16401-202ENSMUST00000197463 2074 ntBASIC14.97□□□□□ -0.01
Lmx1bO88609 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lmx1bO88609 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Lmx1bO88609 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC14.97□□□□□ -0.01
Lmx1bO88609 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Lmx1bO88609 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Lmx1bO88609 Olfr129-201ENSMUST00000122318 993 ntBASIC14.96□□□□□ -0.01
Lmx1bO88609 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC14.96□□□□□ -0.01
Lmx1bO88609 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC14.96□□□□□ -0.01
Lmx1bO88609 Mir3081-201ENSMUST00000175305 84 ntBASIC14.96□□□□□ -0.01
Lmx1bO88609 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Lmx1bO88609 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC14.96□□□□□ -0.01
Lmx1bO88609 Gm45328-201ENSMUST00000210942 917 ntBASIC14.96□□□□□ -0.01
Lmx1bO88609 Gm18669-201ENSMUST00000216049 778 ntBASIC14.96□□□□□ -0.01
Lmx1bO88609 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Gm26917-202ENSMUST00000192833 3329 ntBASIC14.96□□□□□ -0.01
Lmx1bO88609 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC14.96□□□□□ -0.01
Lmx1bO88609 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Lmx1bO88609 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
Lmx1bO88609 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Lmx1bO88609 Gm26596-201ENSMUST00000180464 2655 ntBASIC14.96□□□□□ -0.02
Lmx1bO88609 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Lmx1bO88609 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
Lmx1bO88609 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC14.95□□□□□ -0.02
Lmx1bO88609 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC14.95□□□□□ -0.02
Lmx1bO88609 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Hivep3-201ENSMUST00000084306 2973 ntBASIC14.95□□□□□ -0.02
Lmx1bO88609 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
Lmx1bO88609 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Lmx1bO88609 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.95□□□□□ -0.02
Lmx1bO88609 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lmx1bO88609 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lmx1bO88609 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lmx1bO88609 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lmx1bO88609 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC14.94□□□□□ -0.02
Lmx1bO88609 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lmx1bO88609 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC14.94□□□□□ -0.02
Lmx1bO88609 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lmx1bO88609 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Lmx1bO88609 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Lmx1bO88609 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Lmx1bO88609 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lmx1bO88609 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Lmx1bO88609 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms