Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Cops4O88544 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cops4O88544 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cops4O88544 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cops4O88544 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cops4O88544 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cops4O88544 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cops4O88544 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cops4O88544 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
Cops4O88544 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cops4O88544 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC15.32■□□□□ 0.04
Cops4O88544 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cops4O88544 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC15.32■□□□□ 0.04
Cops4O88544 Mir6349-201ENSMUST00000184059 97 ntBASIC15.32■□□□□ 0.04
Cops4O88544 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC15.32■□□□□ 0.04
Cops4O88544 Gm21596-201ENSMUST00000178049 1316 ntBASIC15.32■□□□□ 0.04
Cops4O88544 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
Cops4O88544 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cops4O88544 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cops4O88544 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC15.32■□□□□ 0.04
Cops4O88544 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Cops4O88544 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Cops4O88544 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Cops4O88544 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Cops4O88544 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC15.31■□□□□ 0.04
Cops4O88544 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Cops4O88544 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Cops4O88544 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Cops4O88544 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC15.31■□□□□ 0.04
Cops4O88544 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Cops4O88544 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC15.31■□□□□ 0.04
Cops4O88544 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Cops4O88544 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cops4O88544 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cops4O88544 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cops4O88544 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC15.3■□□□□ 0.04
Cops4O88544 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cops4O88544 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cops4O88544 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cops4O88544 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Cops4O88544 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cops4O88544 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC15.3■□□□□ 0.04
Cops4O88544 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC15.3■□□□□ 0.04
Cops4O88544 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cops4O88544 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cops4O88544 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cops4O88544 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cops4O88544 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cops4O88544 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC15.29■□□□□ 0.04
Cops4O88544 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cops4O88544 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC15.29■□□□□ 0.04
Cops4O88544 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC15.29■□□□□ 0.04
Cops4O88544 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Gm15375-201ENSMUST00000119510 849 ntBASIC15.29■□□□□ 0.04
Cops4O88544 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cops4O88544 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cops4O88544 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops4O88544 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms