Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC16.15■□□□□ 0.18
Chd3B1AR17 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Chd3B1AR17 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC16.15■□□□□ 0.18
Chd3B1AR17 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Chd3B1AR17 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC16.15■□□□□ 0.18
Chd3B1AR17 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Gm7461-201ENSMUST00000058918 827 ntBASIC16.15■□□□□ 0.18
Chd3B1AR17 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Chd3B1AR17 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd3B1AR17 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC16.14■□□□□ 0.17
Chd3B1AR17 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
Chd3B1AR17 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
Chd3B1AR17 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm43347-201ENSMUST00000200226 580 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 CT009713.7-201ENSMUST00000224689 571 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC16.14■□□□□ 0.17
Chd3B1AR17 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Chd3B1AR17 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm24589-201ENSMUST00000116692 94 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Chd3B1AR17 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44357-201ENSMUST00000195897 142 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm19658-201ENSMUST00000196231 138 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44367-201ENSMUST00000196836 138 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44350-201ENSMUST00000197197 138 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44390-201ENSMUST00000197533 144 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44313-201ENSMUST00000198018 138 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44486-201ENSMUST00000198508 138 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44454-201ENSMUST00000198541 138 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44314-201ENSMUST00000199263 138 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44394-201ENSMUST00000199558 138 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44484-201ENSMUST00000199873 138 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44466-201ENSMUST00000200264 138 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Gm44359-201ENSMUST00000200671 138 ntBASIC16.14■□□□□ 0.17
Chd3B1AR17 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Chd3B1AR17 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Chd3B1AR17 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Chd3B1AR17 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC16.13■□□□□ 0.17
Chd3B1AR17 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Chd3B1AR17 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Gm42900-201ENSMUST00000197184 2167 ntBASIC16.13■□□□□ 0.17
Chd3B1AR17 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC16.13■□□□□ 0.17
Chd3B1AR17 AC159301.1-201ENSMUST00000225130 1182 ntBASIC16.13■□□□□ 0.17
Chd3B1AR17 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Chd3B1AR17 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Chd3B1AR17 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd3B1AR17 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Mir5126-201ENSMUST00000175513 77 ntBASIC16.12■□□□□ 0.17
Chd3B1AR17 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms