Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf40aQ9R1C7 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 AC154855.1-201ENSMUST00000227353 1458 ntBASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf40aQ9R1C7 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Mir7071-201ENSMUST00000184847 69 ntBASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Gm9987-201ENSMUST00000069768 567 ntBASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Gm36858-201ENSMUST00000194501 2391 ntBASIC18.22■□□□□ 0.51
Prpf40aQ9R1C7 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Prpf40aQ9R1C7 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Prpf40aQ9R1C7 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Prpf40aQ9R1C7 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Prpf40aQ9R1C7 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf40aQ9R1C7 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Prpf40aQ9R1C7 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms