Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Scn11aQ9R053 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Gm8097-201ENSMUST00000117903 829 ntBASIC19.6■□□□□ 0.73
Scn11aQ9R053 Gm7230-201ENSMUST00000173026 815 ntBASIC19.6■□□□□ 0.73
Scn11aQ9R053 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC19.6■□□□□ 0.73
Scn11aQ9R053 AC127349.1-201ENSMUST00000224590 266 ntBASIC19.6■□□□□ 0.73
Scn11aQ9R053 Bloc1s5-203ENSMUST00000224902 612 ntBASIC19.6■□□□□ 0.73
Scn11aQ9R053 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn11aQ9R053 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Gm8839-201ENSMUST00000121279 1645 ntBASIC19.6■□□□□ 0.73
Scn11aQ9R053 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Gm43294-201ENSMUST00000202850 2490 ntBASIC19.6■□□□□ 0.73
Scn11aQ9R053 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC19.6■□□□□ 0.73
Scn11aQ9R053 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn11aQ9R053 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn11aQ9R053 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn11aQ9R053 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.59■□□□□ 0.73
Scn11aQ9R053 Gm36858-201ENSMUST00000194501 2391 ntBASIC19.59■□□□□ 0.73
Scn11aQ9R053 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Scn11aQ9R053 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC19.59■□□□□ 0.73
Scn11aQ9R053 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
Scn11aQ9R053 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC19.59■□□□□ 0.73
Scn11aQ9R053 Gm10060-201ENSMUST00000212002 111 ntBASIC19.59■□□□□ 0.73
Scn11aQ9R053 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC19.59■□□□□ 0.73
Scn11aQ9R053 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn11aQ9R053 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn11aQ9R053 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.58■□□□□ 0.73
Scn11aQ9R053 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Scn11aQ9R053 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Scn11aQ9R053 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Scn11aQ9R053 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC19.58■□□□□ 0.73
Scn11aQ9R053 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Scn11aQ9R053 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Scn11aQ9R053 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC19.58■□□□□ 0.72
Scn11aQ9R053 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Scn11aQ9R053 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC19.58■□□□□ 0.72
Scn11aQ9R053 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Scn11aQ9R053 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Scn11aQ9R053 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Scn11aQ9R053 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn11aQ9R053 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC19.57■□□□□ 0.72
Scn11aQ9R053 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn11aQ9R053 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.57■□□□□ 0.72
Scn11aQ9R053 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Gm4535-201ENSMUST00000182274 558 ntBASIC19.56■□□□□ 0.72
Scn11aQ9R053 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Gm10355-201ENSMUST00000097146 517 ntBASIC19.56■□□□□ 0.72
Scn11aQ9R053 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn11aQ9R053 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Gm2756-201ENSMUST00000195851 400 ntBASIC19.55■□□□□ 0.72
Scn11aQ9R053 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
Scn11aQ9R053 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Scn11aQ9R053 AC132265.1-201ENSMUST00000219233 1665 ntBASIC19.55■□□□□ 0.72
Scn11aQ9R053 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms