Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Syne4Q8CII8 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Syne4Q8CII8 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Syne4Q8CII8 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Syne4Q8CII8 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.77■□□□□ 0.59
Syne4Q8CII8 Gm9889-202ENSMUST00000206983 1577 ntBASIC18.76■□□□□ 0.59
Syne4Q8CII8 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Syne4Q8CII8 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Gm6550-201ENSMUST00000187574 993 ntBASIC18.76■□□□□ 0.59
Syne4Q8CII8 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC18.76■□□□□ 0.59
Syne4Q8CII8 Gm6089-201ENSMUST00000197666 938 ntBASIC18.76■□□□□ 0.59
Syne4Q8CII8 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Gm43935-201ENSMUST00000203569 1050 ntBASIC18.76■□□□□ 0.59
Syne4Q8CII8 AC154621.1-201ENSMUST00000226155 1119 ntBASIC18.76■□□□□ 0.59
Syne4Q8CII8 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Syne4Q8CII8 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Gm10461-201ENSMUST00000202073 4786 ntBASIC18.76■□□□□ 0.59
Syne4Q8CII8 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.76■□□□□ 0.59
Syne4Q8CII8 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Syne4Q8CII8 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Gm14140-201ENSMUST00000119999 995 ntBASIC18.75■□□□□ 0.59
Syne4Q8CII8 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Gm7507-201ENSMUST00000183053 1008 ntBASIC18.75■□□□□ 0.59
Syne4Q8CII8 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC18.75■□□□□ 0.59
Syne4Q8CII8 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
Syne4Q8CII8 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Syne4Q8CII8 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.74■□□□□ 0.59
Syne4Q8CII8 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Syne4Q8CII8 Gm27397-201ENSMUST00000184997 107 ntBASIC18.74■□□□□ 0.59
Syne4Q8CII8 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Syne4Q8CII8 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC18.74■□□□□ 0.59
Syne4Q8CII8 AC154757.1-201ENSMUST00000228289 336 ntBASIC18.74■□□□□ 0.59
Syne4Q8CII8 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Syne4Q8CII8 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Syne4Q8CII8 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Syne4Q8CII8 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Syne4Q8CII8 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Syne4Q8CII8 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Syne4Q8CII8 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Syne4Q8CII8 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Syne4Q8CII8 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Gm24513-201ENSMUST00000174964 138 ntBASIC18.73■□□□□ 0.59
Syne4Q8CII8 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC18.73■□□□□ 0.59
Syne4Q8CII8 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Syne4Q8CII8 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Gm8097-201ENSMUST00000117903 829 ntBASIC18.72■□□□□ 0.59
Syne4Q8CII8 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Gm9727-201ENSMUST00000161387 555 ntBASIC18.72■□□□□ 0.59
Syne4Q8CII8 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Gm27628-201ENSMUST00000184911 107 ntBASIC18.72■□□□□ 0.59
Syne4Q8CII8 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 AC225888.1-201ENSMUST00000227184 728 ntBASIC18.72■□□□□ 0.59
Syne4Q8CII8 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms