Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trav3-1Q5R1I8 Sorbs3-204ENSMUST00000227929 2460 ntBASIC11.29□□□□□ -0.6
Trav3-1Q5R1I8 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC11.29□□□□□ -0.6
Trav3-1Q5R1I8 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav3-1Q5R1I8 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav3-1Q5R1I8 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav3-1Q5R1I8 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Ntrk2-208ENSMUST00000225583 2719 ntBASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav3-1Q5R1I8 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trav3-1Q5R1I8 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC11.27□□□□□ -0.6
Trav3-1Q5R1I8 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trav3-1Q5R1I8 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC11.27□□□□□ -0.6
Trav3-1Q5R1I8 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Trav3-1Q5R1I8 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Trav3-1Q5R1I8 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trav3-1Q5R1I8 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trav3-1Q5R1I8 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trav3-1Q5R1I8 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trav3-1Q5R1I8 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC11.27□□□□□ -0.6
Trav3-1Q5R1I8 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 AC121805.2-201ENSMUST00000218808 2538 ntBASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Trav3-1Q5R1I8 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav3-1Q5R1I8 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav3-1Q5R1I8 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav3-1Q5R1I8 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav3-1Q5R1I8 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav3-1Q5R1I8 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Trav3-1Q5R1I8 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav3-1Q5R1I8 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav3-1Q5R1I8 Kcnk16-202ENSMUST00000225596 2127 ntBASIC11.26□□□□□ -0.61
Trav3-1Q5R1I8 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trav3-1Q5R1I8 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trav3-1Q5R1I8 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms