Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Trim41Q5NCC3 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC28.69■■■□□ 2.18
Trim41Q5NCC3 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC28.69■■■□□ 2.18
Trim41Q5NCC3 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Trim41Q5NCC3 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Trim41Q5NCC3 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Trim41Q5NCC3 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Trim41Q5NCC3 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
Trim41Q5NCC3 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Trim41Q5NCC3 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Trim41Q5NCC3 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Trim41Q5NCC3 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC28.68■■■□□ 2.18
Trim41Q5NCC3 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Trim41Q5NCC3 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Trim41Q5NCC3 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Trim41Q5NCC3 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC28.68■■■□□ 2.18
Trim41Q5NCC3 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Trim41Q5NCC3 Gm44454-201ENSMUST00000198541 138 ntBASIC28.68■■■□□ 2.18
Trim41Q5NCC3 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Trim41Q5NCC3 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC28.68■■■□□ 2.18
Trim41Q5NCC3 Gm15442-201ENSMUST00000117905 1527 ntBASIC28.68■■■□□ 2.18
Trim41Q5NCC3 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Trim41Q5NCC3 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Trim41Q5NCC3 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Trim41Q5NCC3 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Trim41Q5NCC3 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC28.66■■■□□ 2.18
Trim41Q5NCC3 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Trim41Q5NCC3 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Trim41Q5NCC3 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Trim41Q5NCC3 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Trim41Q5NCC3 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC28.65■■■□□ 2.18
Trim41Q5NCC3 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Trim41Q5NCC3 Gm32996-201ENSMUST00000199828 1447 ntBASIC28.64■■■□□ 2.18
Trim41Q5NCC3 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
Trim41Q5NCC3 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC28.64■■■□□ 2.18
Trim41Q5NCC3 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC28.64■■■□□ 2.18
Trim41Q5NCC3 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.17
Trim41Q5NCC3 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC28.64■■■□□ 2.17
Trim41Q5NCC3 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Trim41Q5NCC3 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Trim41Q5NCC3 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Trim41Q5NCC3 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC28.63■■■□□ 2.17
Trim41Q5NCC3 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Trim41Q5NCC3 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC28.63■■■□□ 2.17
Trim41Q5NCC3 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC28.63■■■□□ 2.17
Trim41Q5NCC3 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Trim41Q5NCC3 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC28.63■■■□□ 2.17
Trim41Q5NCC3 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
Trim41Q5NCC3 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
Trim41Q5NCC3 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
Trim41Q5NCC3 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC28.62■■■□□ 2.17
Trim41Q5NCC3 Mir5126-201ENSMUST00000175513 77 ntBASIC28.62■■■□□ 2.17
Trim41Q5NCC3 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC28.62■■■□□ 2.17
Trim41Q5NCC3 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC28.62■■■□□ 2.17
Trim41Q5NCC3 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Trim41Q5NCC3 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC28.61■■■□□ 2.17
Trim41Q5NCC3 AC154527.4-201ENSMUST00000224364 1667 ntBASIC28.61■■■□□ 2.17
Trim41Q5NCC3 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
Trim41Q5NCC3 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Retrieved 100 of 76,532 protein–RNA pairs in 74.9 ms