Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Golph3-205ENSMUST00000228671 2842 ntBASIC16.22■□□□□ 0.19
Col9a1Q05722 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Col9a1Q05722 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC16.21■□□□□ 0.19
Col9a1Q05722 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC16.21■□□□□ 0.19
Col9a1Q05722 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col9a1Q05722 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col9a1Q05722 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Col9a1Q05722 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col9a1Q05722 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col9a1Q05722 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col9a1Q05722 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col9a1Q05722 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col9a1Q05722 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.21■□□□□ 0.19
Col9a1Q05722 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC16.21■□□□□ 0.19
Col9a1Q05722 Gm27430-201ENSMUST00000184585 107 ntBASIC16.21■□□□□ 0.19
Col9a1Q05722 Gm43474-201ENSMUST00000196415 774 ntBASIC16.21■□□□□ 0.19
Col9a1Q05722 Gm44333-201ENSMUST00000197168 107 ntBASIC16.21■□□□□ 0.19
Col9a1Q05722 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC16.21■□□□□ 0.19
Col9a1Q05722 AC159295.1-201ENSMUST00000225326 940 ntBASIC16.21■□□□□ 0.19
Col9a1Q05722 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col9a1Q05722 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Col9a1Q05722 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col9a1Q05722 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC16.21■□□□□ 0.19
Col9a1Q05722 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col9a1Q05722 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col9a1Q05722 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Col9a1Q05722 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
Col9a1Q05722 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col9a1Q05722 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col9a1Q05722 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.2■□□□□ 0.18
Col9a1Q05722 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col9a1Q05722 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Col9a1Q05722 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col9a1Q05722 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col9a1Q05722 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col9a1Q05722 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col9a1Q05722 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col9a1Q05722 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Col9a1Q05722 Gm44719-201ENSMUST00000206404 149 ntBASIC16.2■□□□□ 0.18
Col9a1Q05722 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col9a1Q05722 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col9a1Q05722 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col9a1Q05722 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC16.2■□□□□ 0.18
Col9a1Q05722 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col9a1Q05722 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC16.19■□□□□ 0.18
Col9a1Q05722 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col9a1Q05722 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col9a1Q05722 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col9a1Q05722 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col9a1Q05722 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col9a1Q05722 Gm13332-201ENSMUST00000120451 1398 ntBASIC16.19■□□□□ 0.18
Col9a1Q05722 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
Col9a1Q05722 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC16.19■□□□□ 0.18
Col9a1Q05722 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col9a1Q05722 AC127302.2-201ENSMUST00000215212 268 ntBASIC16.19■□□□□ 0.18
Col9a1Q05722 Gm6991-201ENSMUST00000218475 1178 ntBASIC16.19■□□□□ 0.18
Col9a1Q05722 AC127349.1-201ENSMUST00000224590 266 ntBASIC16.19■□□□□ 0.18
Col9a1Q05722 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col9a1Q05722 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col9a1Q05722 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col9a1Q05722 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col9a1Q05722 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col9a1Q05722 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col9a1Q05722 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col9a1Q05722 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col9a1Q05722 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC16.18■□□□□ 0.18
Col9a1Q05722 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
Col9a1Q05722 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC16.18■□□□□ 0.18
Col9a1Q05722 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col9a1Q05722 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col9a1Q05722 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col9a1Q05722 Gm12151-201ENSMUST00000121374 290 ntBASIC16.18■□□□□ 0.18
Col9a1Q05722 Gm6546-201ENSMUST00000192096 766 ntBASIC16.18■□□□□ 0.18
Col9a1Q05722 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC16.18■□□□□ 0.18
Col9a1Q05722 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
Col9a1Q05722 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col9a1Q05722 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col9a1Q05722 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col9a1Q05722 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Col9a1Q05722 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col9a1Q05722 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Col9a1Q05722 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC16.18■□□□□ 0.18
Col9a1Q05722 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC16.17■□□□□ 0.18
Col9a1Q05722 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col9a1Q05722 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col9a1Q05722 AC154572.2-201ENSMUST00000225105 997 ntBASIC16.17■□□□□ 0.18
Col9a1Q05722 Wdyhv1-203ENSMUST00000226889 394 ntBASIC16.17■□□□□ 0.18
Col9a1Q05722 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col9a1Q05722 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col9a1Q05722 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col9a1Q05722 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col9a1Q05722 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col9a1Q05722 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col9a1Q05722 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
Col9a1Q05722 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col9a1Q05722 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col9a1Q05722 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col9a1Q05722 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col9a1Q05722 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col9a1Q05722 Mir449b-201ENSMUST00000104833 80 ntBASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms