Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Hmgb1P63158 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Hmgb1P63158 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Hmgb1P63158 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
Hmgb1P63158 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb1P63158 Gm26917-202ENSMUST00000192833 3329 ntBASIC18.23■□□□□ 0.51
Hmgb1P63158 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb1P63158 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Hmgb1P63158 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.23■□□□□ 0.51
Hmgb1P63158 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.23■□□□□ 0.51
Hmgb1P63158 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb1P63158 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb1P63158 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb1P63158 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb1P63158 Gm10812-201ENSMUST00000099864 546 ntBASIC18.23■□□□□ 0.51
Hmgb1P63158 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
Hmgb1P63158 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb1P63158 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb1P63158 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb1P63158 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Hmgb1P63158 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Hmgb1P63158 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
Hmgb1P63158 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
Hmgb1P63158 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Hmgb1P63158 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC18.22■□□□□ 0.51
Hmgb1P63158 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.22■□□□□ 0.51
Hmgb1P63158 Mir5122-201ENSMUST00000175004 89 ntBASIC18.22■□□□□ 0.51
Hmgb1P63158 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.22■□□□□ 0.51
Hmgb1P63158 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Hmgb1P63158 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Hmgb1P63158 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.22■□□□□ 0.51
Hmgb1P63158 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb1P63158 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb1P63158 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.51
Hmgb1P63158 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.21■□□□□ 0.51
Hmgb1P63158 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Hmgb1P63158 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb1P63158 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb1P63158 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb1P63158 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC18.21■□□□□ 0.51
Hmgb1P63158 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb1P63158 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Hmgb1P63158 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb1P63158 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Hmgb1P63158 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb1P63158 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb1P63158 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb1P63158 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
Hmgb1P63158 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb1P63158 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb1P63158 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Hmgb1P63158 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb1P63158 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb1P63158 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb1P63158 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.2■□□□□ 0.5
Hmgb1P63158 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC18.2■□□□□ 0.5
Hmgb1P63158 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.2■□□□□ 0.5
Hmgb1P63158 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.2■□□□□ 0.5
Hmgb1P63158 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb1P63158 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Hmgb1P63158 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
Hmgb1P63158 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb1P63158 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb1P63158 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb1P63158 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Hmgb1P63158 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb1P63158 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Hmgb1P63158 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Hmgb1P63158 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb1P63158 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb1P63158 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb1P63158 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb1P63158 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb1P63158 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.19■□□□□ 0.5
Hmgb1P63158 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb1P63158 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.19■□□□□ 0.5
Hmgb1P63158 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.19■□□□□ 0.5
Hmgb1P63158 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.19■□□□□ 0.5
Hmgb1P63158 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC18.19■□□□□ 0.5
Hmgb1P63158 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb1P63158 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb1P63158 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb1P63158 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb1P63158 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms