Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shmt1P50431 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Shmt1P50431 Gm15794-201ENSMUST00000120182 631 ntBASIC17.54■□□□□ 0.4
Shmt1P50431 Olfr129-201ENSMUST00000122318 993 ntBASIC17.54■□□□□ 0.4
Shmt1P50431 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Shmt1P50431 Gm45328-201ENSMUST00000210942 917 ntBASIC17.54■□□□□ 0.4
Shmt1P50431 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC17.54■□□□□ 0.4
Shmt1P50431 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Shmt1P50431 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shmt1P50431 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shmt1P50431 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shmt1P50431 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shmt1P50431 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shmt1P50431 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shmt1P50431 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shmt1P50431 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Shmt1P50431 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Shmt1P50431 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Shmt1P50431 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shmt1P50431 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC17.53■□□□□ 0.4
Shmt1P50431 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Shmt1P50431 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Shmt1P50431 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC17.53■□□□□ 0.4
Shmt1P50431 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shmt1P50431 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shmt1P50431 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shmt1P50431 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shmt1P50431 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Shmt1P50431 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shmt1P50431 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.52■□□□□ 0.4
Shmt1P50431 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Shmt1P50431 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 Gm27742-201ENSMUST00000184667 60 ntBASIC17.52■□□□□ 0.4
Shmt1P50431 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Shmt1P50431 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Shmt1P50431 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Shmt1P50431 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Shmt1P50431 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Shmt1P50431 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
Shmt1P50431 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Shmt1P50431 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC17.51■□□□□ 0.39
Shmt1P50431 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Shmt1P50431 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC17.5■□□□□ 0.39
Shmt1P50431 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 AC159205.3-201ENSMUST00000224614 874 ntBASIC17.5■□□□□ 0.39
Shmt1P50431 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Shmt1P50431 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Shmt1P50431 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Shmt1P50431 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Shmt1P50431 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Shmt1P50431 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.49■□□□□ 0.39
Shmt1P50431 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC17.49■□□□□ 0.39
Shmt1P50431 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Shmt1P50431 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Shmt1P50431 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.49■□□□□ 0.39
Shmt1P50431 Otx2os1-206ENSMUST00000228153 787 ntBASIC17.49■□□□□ 0.39
Shmt1P50431 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Shmt1P50431 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Shmt1P50431 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Shmt1P50431 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Shmt1P50431 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms