Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Arhgef4-208ENSMUST00000211073 171 ntBASIC17.94■□□□□ 0.46
RaraP11416 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RaraP11416 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
RaraP11416 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RaraP11416 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RaraP11416 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RaraP11416 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RaraP11416 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC17.93■□□□□ 0.46
RaraP11416 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Gm4217-201ENSMUST00000182243 1002 ntBASIC17.93■□□□□ 0.46
RaraP11416 Gm21814-202ENSMUST00000203277 873 ntBASIC17.93■□□□□ 0.46
RaraP11416 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.93■□□□□ 0.46
RaraP11416 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
RaraP11416 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
RaraP11416 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
RaraP11416 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
RaraP11416 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
RaraP11416 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC17.92■□□□□ 0.46
RaraP11416 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC17.92■□□□□ 0.46
RaraP11416 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.92■□□□□ 0.46
RaraP11416 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RaraP11416 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
RaraP11416 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
RaraP11416 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
RaraP11416 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.91■□□□□ 0.46
RaraP11416 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RaraP11416 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC17.9■□□□□ 0.46
RaraP11416 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.9■□□□□ 0.46
RaraP11416 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
RaraP11416 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC17.9■□□□□ 0.46
RaraP11416 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.9■□□□□ 0.46
RaraP11416 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC17.9■□□□□ 0.46
RaraP11416 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC17.9■□□□□ 0.46
RaraP11416 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RaraP11416 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
RaraP11416 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms