Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm7712-202ENSMUST00000222331 1510 ntBASIC15.7■□□□□ 0.1
Lire1P11260 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.7■□□□□ 0.1
Lire1P11260 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC15.7■□□□□ 0.1
Lire1P11260 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
Lire1P11260 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Lire1P11260 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC15.7■□□□□ 0.1
Lire1P11260 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Lire1P11260 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Lire1P11260 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
Lire1P11260 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
Lire1P11260 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Lire1P11260 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Lire1P11260 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Lire1P11260 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC15.69■□□□□ 0.1
Lire1P11260 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Lire1P11260 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Lire1P11260 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC15.69■□□□□ 0.1
Lire1P11260 Gm11539-201ENSMUST00000119837 557 ntBASIC15.69■□□□□ 0.1
Lire1P11260 Gm13436-201ENSMUST00000120418 567 ntBASIC15.69■□□□□ 0.1
Lire1P11260 Gm12382-201ENSMUST00000122005 922 ntBASIC15.69■□□□□ 0.1
Lire1P11260 Gm6659-201ENSMUST00000174752 547 ntBASIC15.69■□□□□ 0.1
Lire1P11260 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Lire1P11260 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.69■□□□□ 0.1
Lire1P11260 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC15.68■□□□□ 0.1
Lire1P11260 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Lire1P11260 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC15.68■□□□□ 0.1
Lire1P11260 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Lire1P11260 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Lire1P11260 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC15.68■□□□□ 0.1
Lire1P11260 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Lire1P11260 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
Lire1P11260 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC15.67■□□□□ 0.1
Lire1P11260 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC15.67■□□□□ 0.1
Lire1P11260 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Lire1P11260 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC15.67■□□□□ 0.1
Lire1P11260 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Lire1P11260 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Gm21362-201ENSMUST00000194272 928 ntBASIC15.67■□□□□ 0.1
Lire1P11260 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lire1P11260 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Lire1P11260 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
Lire1P11260 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms