Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC13.81□□□□□ -0.2
Hmgb3O54879 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC13.81□□□□□ -0.2
Hmgb3O54879 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Hmgb3O54879 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC13.81□□□□□ -0.2
Hmgb3O54879 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
Hmgb3O54879 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Hmgb3O54879 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Hmgb3O54879 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Hmgb3O54879 Gm10129-202ENSMUST00000193100 1316 ntBASIC13.81□□□□□ -0.2
Hmgb3O54879 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Hmgb3O54879 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hmgb3O54879 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Hmgb3O54879 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Hmgb3O54879 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Hmgb3O54879 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
Hmgb3O54879 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 AC140264.2-202ENSMUST00000218746 817 ntBASIC13.8□□□□□ -0.2
Hmgb3O54879 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Hmgb3O54879 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
Hmgb3O54879 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC13.8□□□□□ -0.2
Hmgb3O54879 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Hmgb3O54879 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hmgb3O54879 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Gm21168-201ENSMUST00000199646 1096 ntBASIC13.79□□□□□ -0.2
Hmgb3O54879 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Hmgb3O54879 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC13.79□□□□□ -0.2
Hmgb3O54879 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC13.79□□□□□ -0.2
Hmgb3O54879 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hmgb3O54879 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC13.78□□□□□ -0.2
Hmgb3O54879 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Hmgb3O54879 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC13.78□□□□□ -0.2
Hmgb3O54879 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC13.78□□□□□ -0.2
Hmgb3O54879 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Hmgb3O54879 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Hmgb3O54879 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Hmgb3O54879 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC13.78□□□□□ -0.2
Hmgb3O54879 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 59 ms